U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX27056584: ChIP-Seq of MbpR(R192A) in Lactiplantibacillus_plantarum WCFS1
1 ILLUMINA (HiSeq X Ten) run: 18.6M spots, 5.6G bases, 1.6Gb downloads

Design: ChIP-Seq of MbpR(R192A), paired reads
Submitted by: Hainan University
Study: ChIP-seq data of LP_RS00300 in Lactiplantibacillus plantarum WCFS1
show Abstracthide Abstract
The WYL transcription factor (LP_RS00300) is a c-di-GMP effector in L. plantarum WCFS1. LP_RS00300 binds to a special motif within the coding sequence, impeding the transcriptional elongation of LP_RS05345 and LP_RS05225, which encode mucus binding proteins (MucBPs). The perception of c-di-GMP by the WYL domain reversed the inhibitory effect of LP_RS00300 on the expression of MucBPs, resulting in increased adherence to intestinal epithelial cells by L. plantarum. Overall, our study provides evidence that a WYL transcription factor participates in probiotic colonization by sensing c-di-GMP.
Sample:
SAMN42167269 • SRS21850778 • All experiments • All runs
Library:
Name: IP_MbpR(R192A)
Instrument: HiSeq X Ten
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: PAIRED
Runs: 1 run, 18.6M spots, 5.6G bases, 1.6Gb
Run# of Spots# of BasesSizePublished
SRR3169478918,626,1135.6G1.6Gb2024-12-12

ID:
36532147

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...